Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs73487829 | chr11:62608815 | G/A | 8.02E-5 | 489 | 16.13 | 14.48 | 14.27 | KM Plot |
| THCA | rs73499199 | chr8:8372878 | T/C | 2.98E-9 | 487 | 16.1 | 16.65 | 8.83 | KM Plot |
| THCA | rs73512759 | chr19:11595314 | G/C | 5.29E-7 | 489 | 15.9 | 15.58 | 33.97 | KM Plot |
| THCA | rs73528886 | chr11:72013848 | G/A | 4.87E-6 | 486 | 16.22 | 14.45 | 11.77 | KM Plot |
| THCA | rs7355216 | chr1:156567730 | A/G | 0 | 490 | 15.87 | 17.73 | 10.52 | KM Plot |
| THCA | rs7356981 | chr6:153301010 | G/C | 0 | 489 | 15.17 | 18.32 | 6.92 | KM Plot |
| THCA | rs73573497 | chr19:58165890 | G/A | 0.000132 | 481 | 14.93 | 17.47 | 4.87 | KM Plot |
| THCA | rs73573500 | chr19:58166262 | C/T | 0.000132 | 481 | 14.93 | 17.47 | 4.87 | KM Plot |
| THCA | rs73573501 | chr19:58166536 | C/T | 0.000132 | 481 | 14.93 | 17.47 | 4.87 | KM Plot |
| THCA | rs73589615 | chr14:24713179 | C/T | 3.54E-11 | 481 | 15.87 | 17.13 | 9.75 | KM Plot |
| THCA | rs73601808 | chr20:18277832 | T/G | 5.6E-11 | 467 | 15.97 | 15.3 | 5.8 | KM Plot |
| THCA | rs73735707 | chr6:46081628 | A/C | 5.54E-5 | 490 | 15.68 | 16.57 | 17.77 | KM Plot |
| THCA | rs7377932 | chr4:2035597 | C/T | 0.000266 | 490 | 13.37 | 15.33 | 16.83 | KM Plot |
| THCA | rs73788035 | chr5:111825467 | C/T | 4.6E-6 | 475 | 15.67 | 16.63 | 16.8 | KM Plot |
| THCA | rs73793382 | chr4:1357048 | A/G | 1.11E-7 | 487 | 16.3 | 14.97 | 6.83 | KM Plot |